PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2913 days ago
2913 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namel...2893 days ago
YASS :: genomic similarity search tool
...a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or pl...he heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATT...ble to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but inte...2887 days ago
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Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow an...2831 days ago
2759 days ago