Results for "DNA"

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  • PAired-eND Assembler for DNA sequences

    PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.   More at https://github.com/neufeld/pandaseq

    2913 days ago

  • Sequence assembly with MIRA 4

    MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sang...

    2913 days ago

  • Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences

    Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namel...

    2893 days ago

  • YASS :: genomic similarity search tool

    ...a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or pl...he heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATT...ble to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but inte...

    2887 days ago

  • methylKit

    methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and i...

    2855 days ago

  • Blobsplorer

    Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous d...

    2844 days ago

  • A5-miseq

    _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_...

    2779 days ago

  • QuIN’s web server

    ...cations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA-PET and H...

    2831 days ago

  • Kraken: ultrafast metagenomic sequence classification using exact alignments

    Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow an...

    2831 days ago

  • Artemis Comparison Tool (ACT)

    ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between...

    2759 days ago