2831 days ago
Genome Assembly Tools and Software - PART1 !!
...suitable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analy...ranslation for either RNA-seq or DNA-seq SOLiD assemblies....s. Sequencher 5.4.1 – DNA Sequence Assembly and Analysi...r phasing genomic variants using DNA sequencing reads, also called...2648 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...hat ideally reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...l coding sequence isolated at random from a cDNA library, used for identificat...an they do with any other clade. repetitive DNA -- Sequences of DNA that are...2424 days ago
List of visualization tools for genome alignments
...-frame translation http://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web toolkit for regional genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java...2246 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...ryotes. In order for a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus,...tween the niche of the donor and the host. Over the longer term, foreign DNA may become “domesticate...812 days ago
Some useful Bioinformatics links
...mes.html Dot: Interactive dot plot for genome-genome alignments https://dnanexus.github.io/dot/ Zoho Acco...indromic gene amplification — an evolutionarily conserved role for DNA inverted repeats in the genom...2203 days ago
2207 days ago
Tools to Predict the Impact of Missense Variants !
...ationTasterā2 (MT2)“Evaluation of the diseaseācausing potential of DNA sequence alterations”...esent substitutions that would have occurred if the element were neutral DNA, but did not occur because th...2165 days ago
Protein-Protein Interaction Sites Predictions !
...binding site prediction with an empirical scoring function Other Sites (DNA, RNA, Metals) CHED We...in proteins DBD-Hunter A knowledge-based method for the prediction of DNA-protein interactions DISPLAR...2164 days ago
Learning Python Programming - a bioinformatician perspective !
...ell to being integrated with other, existing tools It has features which make it easy to manipulate strings of characters (for example, strings of DNA bases and protein amino acid...2145 days ago