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  • My most common one-liner in bioinformatics

    script available for doing sequence length disrtibution of fastq filecat reads.fastq | awk '{if(NR%4==2) print length($1)}' | sort -n | uniq -c > read_length.txt Plot syntenty /home/urbe/Tools/Sibelia-3.0.6-Linux/bin/Sibelia -s far --gff -q -o palCh101 ch101_read33155_template_pass_FAH31515....

    Tags: Bioinformatics, NGS, Oneliner, Tutorial, Daily

    6 days ago