Results for "Data"

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  • Scripts for the analysis of HGT in genome sequence data.

    Scripts for the analysis of HGT in genome sequence data

    Tags: scripts, analysis, HGT, genome, sequence, data

    2312 days ago

  • MinION_GC: An R script to do some QC on MinION data

    Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flo...

    Tags: MinION_GC, R, script, QC, MinION, data

    2308 days ago

  • GPOPSIM: a simulation tool for whole-genome genetic data

    GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especially can simulate multiple genetically correlated traits with ...

    Tags: GPOPSIM, simulation, tool, whole-genome, genetic, data

    2263 days ago

  • BioCircos.js is an open source interactive Javascript library to interactive display biological data on the web

    BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web. It implements a raster-based SVG visualization using the open source Javascript framework jquery.js. BioCircos.js is multiplatform a...

    Tags: BioCircos.js, open, source, interactive, Javascript, library, interactive, display, biological, data, web

    2261 days ago

  • Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data

    Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls SNPs at each site except for sites at the both end ...

    Tags: Heap, sensitive, accurate, SNP, detection, tool, low-coverage, high-throughput, sequencing, data

    2171 days ago

  • MIX: Combining multiple assemblies from NGS data

    Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent ...

    Tags: MIX, Combining, multiple, assemblies, NGS, data, Tools

    2152 days ago

  • https://scrapy.org/ #extract #data #from #websites #webscraping

    Tags: extract, data, from, websites, webscraping

    2148 days ago

  • BFC: a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data

    BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes. The BFC algorithm is a variant of the classical spectrum alignment algor...

    Tags: BFC, standalone, high-performance, tool, correcting, sequencing, errors, Illumina, sequencing, data

    2129 days ago

  • AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

    Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it suppo...

    Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data

    2100 days ago

  • Epiviz: an interactive visualization tool for functional genomics data.

    Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the...

    Tags: Epiviz, interactive, visualization, tool, functional, genomics, data

    2090 days ago