2655 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $silva_url_LSU = 'https://www.arb-silva.de/fileadmin/silva_databases/release_138_1/Exports/SILVA_1...1123 days ago
Command line to create blast uniref database !
...d), which is available from the NCBI's FTP site: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/. wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/unire...912 days ago
Command line to download blast database / protein
#download all available nr - protein database as a single file #Database location - NCBI where all databases are available ftp://ftp.ncbi.nlm.nih.gov/blast/db/ https://ftp.ncbi.n...906 days ago
Downloading mmseqs databases !
# mmseqs databases Usage: mmseqs databases [options] Name Type...he output path outpath/swissprot: mmseqs databases UniProtKB/Swiss-Prot outpath/...axDB will be downloaded and prepared by the databases command. More information...904 days ago
Installing Covid19 Environment !
...\ Krona installed. You still need to manually update the taxonomy databases before Krona can generate tax...is ktUpdateTaxonomy.sh. The default location for storing taxonomic databases is /home/vikas/anaconda3/envs...886 days ago
881 days ago