Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to ana...r to interact with biotech researchers and learn how do they explain their one graph (which they generally produce...3913 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge a...at you need in your analysis is already coded into the program. Need to plot a graph? Just click this button right...3671 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Alg...3566 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...type information to identify the optimal breakpoint graph representing cancer genomes....1059 days ago
Prepare for Coding Interview !
This is a comprehensive guide to prepare for your next coding interview. It's great f...view_experience_at_google/ #bottom-comments. 1. Data structures 2. Trees and Graph algorithms 3. Dynamic Progra...808 days ago
Genome Assembly Tools and Software - PART2 !!
...ories: string-based model and graph-based model. We therefore lis...scovery. SAGE – String Graph Assembly of GEnomesSAGE i...dwidth paths in weighted read graphs and frequency estimation via...BA / IDBA-UD 1.1.1 – De Bruijn Graph De Novo Assembler with...2649 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a pe...l-GD - Perl GD module for bitmap graphics keiya/KeiSpade-CMS -...n terms of AnyEvent agentzh/makefile-graphviz-pm - Perl CPAN module...nbsp;- MySQL stats logging for Statsd/Graphite naoya/hadoop-streaming-fr...2457 days ago
3909 days ago
3909 days ago
BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX...keywords and BEReX returns a sub-network matching the keywords. The resulting graph can be explored interactively...3803 days ago
3509 days ago
Post-doc position at LABGeM - Evry, France
The LABGeM team (CEA/Genoscope, CNRS UMR 8030, France, Dir. Claudine Médigue) is deve...nd enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic...3031 days ago
11th International Joint Conference on Biomedical Engineering Systems and Technologies
BIOSTEC, the 11th International Joint Conference on Biomedical Engineering Systems an...systems biology, sequence analysis, biostatistics, image analysis, network and graph models, scientific data manag...2613 days ago
3864 days ago
3864 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data struct...3865 days ago
2227 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2209 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, De Bruijn graph
2656 days ago
Comment on "Sibelia: A comparative genomics tool"
...e 2. Dot file with resulting de Bruijn graph All these files are describ...the computation. Resulting de Bruijn graph ------------------------- F...ormed with the genome behind the graph model. Suppose that somewhe...--------------- In "Sibelia" de Bruijn graph is constructed (N + 1)...1248 days ago
2307 days ago