Results for "De Bruijn graph"
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Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Alg...3592 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...type information to identify the optimal breakpoint graph representing cancer genomes....1085 days ago
RNA-Seq De novo Assembly Using Trinity
...ns the sequence data into many individual de Bruijn graphs, each representing the transc...given gene or locus, and then processes each graph independently to extract full...igs into clusters and constructs complete de Bruijn graphs for each cluster. Each clust...2954 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize...ologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....p; More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html2939 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any...2917 days ago
- ...sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016...
2155 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina shor...index (FMD-index) as the key data structure. It is inspired by the string graph assembler (Simpson and D...
2784 days ago
- Seven Bridges is the biomedical data analysis company accelerating breakthroughs in g...uild self-improving systems to analyze millions of genomes, including the Graph Genome Suite — the...
2735 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop com...Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet). D...
2694 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence re...
2694 days ago
