Results for "Deletions"


  • DiscoSnp

    DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads. The number of input read sets is not constrained, it can be one, two, or more. No reference genome is needed.

    3 days ago

  • DIAL

    ...ce genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to determine small insertions/deletions. Our main motivation is to us...

    267 days ago

  • Stampy

    ...s in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions.

    551 days ago

  • GenomeComp

    ...zing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between sp...

    279 days ago

  • segemehl map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not...

    562 days ago

  • MGRA: Breakpoint graphs and ancestral genome reconstructions

    ...e MGRA can reconstruct conserved ancestral regions (CARs) of the ancestral genome of interest. Since version 2 MGRA supports gene insertion and deletions in addition to genome rearran...

    121 days ago

  • GenomeRing: alignment visualization based on SuperGenome coordinates

    ...yses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events....

    309 days ago


    ...n across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplic...

    348 days ago

  • MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

    ...clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as short insertions and deletions. To support the growing inter...

    551 days ago

  • LoRDEC: a hybrid error correction program for long, PacBio reads

    ...ted using the reference set. Typically, the reference set contains Illumina reads. Usually, errors in PacBio reads include many insertions and deletions, and comparatively less subst...

    227 days ago