Results for "Deletions"
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LoRDEC: a hybrid error correction program for long, PacBio reads
...ted using the reference set. Typically, the reference set contains Illumina reads. Usually, errors in PacBio reads include many insertions and deletions, and comparatively less subst...2570 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...e MGRA can reconstruct conserved ancestral regions (CARs) of the ancestral genome of interest. Since version 2 MGRA supports gene insertion and deletions in addition to genome rearran...2464 days ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads. The number of input read sets is not constrained, it can be one, two, or more. No reference genome is needed.
2346 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...pecifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the b...2330 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...arly, enabling ngmlr to reliably align reads to a wide range of different structural variations including nested SVs (e.g. inversions flanked by deletions).2190 days ago
- ...s (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex stru...
2142 days ago
Genome U-Plot: a whole genome visualization
...ome U-Plot for producing clear and intuitive graphs that allows researchers to generate novel insights and hypotheses by visualizing SVs such as deletions, amplifications, and chromoan...2111 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as...2013 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. It has been...2007 days ago
- ...enerated various patterns of simulation data – SV lengths, read lengths, and the depth of coverage of short reads – with insertions, deletions, tandem duplications, inversi...
1920 days ago
