Results for "Deletions"

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  • ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies

    ...lignment and k-mer frequency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-base errors, insertions/deletions, genome rearrangements and ch...

    2894 days ago

  • segemehl

    ...to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not...

    2880 days ago

  • MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

    ...clustering strategy coupled with the Smith-Waterman algorithm. This method is well-suited to capture mismatches as well as short insertions and deletions. To support the growing inter...

    2870 days ago

  • Stampy

    ...s in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions.

    2870 days ago

  • PRISM

    ...n across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplic...

    2666 days ago

  • pyScaf

    ...well if divergence between reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with large rearrangements ie. deletions, insertion, inversions, trans...

    2657 days ago

  • MEME suite

    ...bilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2). In addition to motif...

    2653 days ago

  • GenomeRing: alignment visualization based on SuperGenome coordinates

    ...yses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events....

    2627 days ago

  • GenomeComp

    ...zing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between sp...

    2597 days ago

  • DIAL

    ...ce genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to determine small insertions/deletions. Our main motivation is to us...

    2585 days ago