Results for "Detection"

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  • Recombination detection tool

    A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot

    600 days ago

  • Beagle

    ...g, imputation of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a mo...116-126.doi:10.1016/j.ajhg.2015.11.020 The citation for Beagle's IBD detection algorithm is: B L Browning a...

    332 days ago

  • Bioinformatics tools and software

    ...es and improved diversity measures. UCHIME >Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacteria...

    446 days ago

  • NovelSeq: Novel Sequence Insertion Detection

    The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/20385726

    107 days ago

  • npScarf: Scaffolding and Completing Assemblies in Real-time Fashion

    ...on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements...

    124 days ago

  • 4DGenome

    ...sp;All interaction data are freely available in a standardized file format. Records can be queried by genomic regions, gene names, organism, and detection technology. 

    447 days ago

  • SeqMule: Automated human exome/genome variants detection

    SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by lin...

    201 days ago

  • NearHGT

    ...tic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong p...izontally acquired genes. We then compared the method to existing HGT detection tools using a larger strain d...

    459 days ago

  • Pilon

    Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a FAS...

    594 days ago

  • WiseScaffolder

    ...ommands: dumpconfig generates a configuration file that notably specifies the average insert size of the mate-pair library preprocess allows the detection and correction of chimerae, t...

    438 days ago