Results for "Discovery"

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  • Scalpel

    A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalpel, which is open source and available for download on SourceForge, outperformed the popular tools GATK HaplotypeCaller and ...

    Tags: Bioinformatics, Scalpel, Genetic, Variants, Discovery, Tool

    1066 days ago

  • ChromHMM: Chromatin state discovery and characterization

    ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivaria...

    Tags: Bioinformatics, ChromHMM, Chromatin, Discovery, Characterization, Chromosome

    92 days ago

  • TARDIS: Toolkit for automated and rapid discovery of structural variants

    tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetching tardis git clone https://github.com/BilkentCompGen/tardis.git --recursive ...

    Tags: TARDIS, Toolkit, automated, rapid, discovery, structural, variants

    41 days ago