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REAPR: a universal tool for genome assembly evaluation
...sembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-ass...2913 days ago
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Many-Core Engine (MCE) for Perl example
...code blocks in parallel with a slight change to syntax from MCE::Map and MCE::Grep. MISCELLANEOUS Miscellaneous additions included with the distribution. MCE::Examples Describes va...2613 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...ely, by examining colinear sets of homologous genes found within a single genome, segmental genome duplications can be revealed. This software distribution includes both the DAGchainer...2596 days ago
WGS Celera Assembler version 8.3rc2
...c2, which was released on May 24, 2015.This distribution package provides a stable, te...cumented version of the software. The distribution is usable on most Unix-like p...f Celera Assembler, is included. This distribution includes [http://samtools.sou...2544 days ago
ANGES: reconstructing ANcestral GEnomeS maps
...Examples with results (featured ancestors: boreoeutherian, amniote, yeasts, Burkholderia, monocots); please refer to the documentation of the distribution above....2506 days ago