Results for "Distribution"
Bio-Scripts
...x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution #USAGE: CI_normal(matrix[,x]...t(matrix[,x],97.5) - single column from a t distribution #Created and updated by Sant...2861 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2254 days ago
- ...nmentSummaryMetrics (Picard) Produces a summary of alignment metrics from a SAM or BAM file. CollectBaseDistributionByCycle (Picard) Chart the nucleotide distribution per cycle in a SAM or BAM fil...
2065 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...tware and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural languag...1540 days ago
Commands to install conda in Ubuntu !
...the 3-clause BSD License: Redistribution and use in source and binary...g conditions are met: * Redistributions of source code must retain t...================== Anaconda Distribution contains open source software...packages are included in this distribution that relate to cryptogr aphy...1501 days ago
Set up WGD environment using conda !
...Show this message and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit a KDE to a Ks distribution. ksd Ks distribution construction. mcl All-vs....1193 days ago
Command line to create blast uniref database !
#The NCBI BLAST+ distribution does not include 'blastpgp', it has been replaced by the 'psiblast' program. The 'blastpgp' program is available in the legacy NCBI BLAST package (no...940 days ago
Install Install Gffcompare on Ubuntu / Linux
...ompare is a program that is used to perform operations on general feature format (GFF) and general transfer format (GTF) files. It has a binary distribution compatible with the linux we’...813 days ago
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distribution and extract it. Like with our...813 days ago
Perl script to calculate the basic stats of the assembled genome !
...n50\n"; print "GC Content: $gc_content%\n"; print "\nContig Length Distribution:\n"; print "---------------------------\n"; # Print contig length distribution foreach my $length (@contig_...84 days ago
