BOL: Results for "Duplications"

Results for "Duplications"

- Jit@jit.aber
Structural variation: the hidden genomic treasure
...hing. CNVs are closely related to segmental duplications (SDs): SDs can stimulate the...riants (SVs) such as deletions, insertions, duplications, inversions and translocation...translocations, and unbalanced ones such as duplications and deletions (copy number va...
2687 days ago
- Jit@jit.aber
Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection tools to study molecular evolution
...ding not only rearrangements but also gene insertions, deletions and duplications. MLGO can be used to infer a...rts a fairly general model of genomic evolution (rearrangements plus duplications, insertions, and losses of ge...
2514 days ago
+1 more Blogs

- Neelam Jha@neelam
mrFAST: Micro Read Fast Alignment Search Tool
...d mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with...
2915 days ago
- Jit@jit.aber
PRISM
...V ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discord...
2687 days ago
+14 more Bookmarks

- Radha Agarkar@radhaagarkar
Tools for Searching Repeats And Palindromic Sequences
...ter characterized and placed into five categories: Simple Repeats - Duplications of simple sets of DNA bases (...ally found at the centromeres and telomeres of chromosomes these are duplications of more complex 100-200 base...
2195 days ago

- Strand@Strand
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
...expensive. Multi-gene panel based on NGS (next-generation sequencing) can allow us to detect all types of mutations, including large deletions/duplications, thus allowing us to perform...
2223 days ago

- Jitendra Narayan@admin
The Mills lab
...aired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects deletions and duplications through analysis of the read...
2977 days ago
- Jit@jit.aber
The Rogers Lab
The Rogers lab studies evolution of genome structure. We explore the ways that complex mutations like duplications, deletions, rearrangements, and retrogenes can create new genetic mater...
1740 days ago

- Jitendra Narayan@admin
Bioinformatics -- Understanding of living systems through information science
...e changes through sudden mutations. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpositions, and duplications, occur. The genome comparis...
3901 days ago

- Jit@jit.aber
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here m...
2124 days ago

- Rahul Nayak@rahul
Comment on "Genome in a Bottle (GIAB) Consortium"
..., as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map regions like pseudogenes and segmental duplications). GIAB is also explorin...
1544 days ago
- BioStar@biostar
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html
1958 days ago
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