Results for "E-Values"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependencies. Installing Perl modules manually by resolving all th...3940 days ago
Perl way to check if an array contains values
Perl is always is known for their flexibility (There is more than one way to do it). Followings are the quick way to check if a value exist in an array. do_somethin...2604 days ago
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Bookmarks
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annota...
3000 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely u...2921 days ago
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Pages
Frequent words problem solution by Perl
Solved with perl http://rosalind.info/problems/1a/ #Find the most frequent k-mers in a string.#Given: A DNA string Text and an integer k.#Return: All most frequent k-...3242 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2676 days ago
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Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a recipe for baking a cake is an algorithm. Most progra...
3936 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "st...3618 days ago
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Wire posts
Opportunity posts
Postdoctoral Researcher in Statistical Bioinformatics at Örebro University
The position is in Medical Sciences, with special focus on Statistical Bioinformatics. The position is a full-time position for a fixed term of two years. The salary...1338 days ago
Fun
What a bioinformatician always dream for ???
...licon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy with lesser E-values and higher compatibility scor...3835 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2896 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires p...
2683 days ago
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Tags
- Dr. Rob Edwards describes how BLAST works
Tags: BLAST, Scores, Parameters, E-Values
3865 days ago
Comments
Comment on "Tools for Differential expression analysis"
Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that a...411 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this manual it is assumed that "Sibelia" is properly installed and the directory with "Sibelia.py" is in your "PATH" environment variable o...1275 days ago
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