Results for "Education"

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  • Next Generation Sequencing (NGS) Tutorials

    Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/  You can also add your favourite NGS educational material, or workshop tutorial by commenting on this bookmarks for user benefit.  Understandin...

    Tags: NGS, Tutorial, Education, Workshop, Pipeline

    1134 days ago

  • seqloc 0.6

    The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in eukaryotic genomes. Handle sequence locations for bioi...

    Tags: Bioinformatics, Computational Biology, Education, Sequence, Seq, Genome, View

    1062 days ago

  • Bioinformatics Scripts

    Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts

    Tags: Bioinformatics, Computational Biology, Education, Study, Script, Perl, Python

    1007 days ago

  • BioScripts

    You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome sequ...

    Tags: Bioinformatics, Computational Biology, Education, Solution, Study, Script, Perl, Python, R, Code

    881 days ago

  • Bioinformatics Made Easy Search: Bioinformatics tools and run genomic analysis in the cloud

    InsideDNA makes hundreds of bioinformatics tools immediately available to run via an easy-to-use web interface and allows an accurate search across all functions, tools and pipelines. With InsideDNA, you can upload and store your own genomic/genetic datasets in a limitless cloud space, and insta...

    Tags: Bioinformatics, Computational Biology, Education, Solution, Puzzle, Study, Script, Cloud, Server, Work, InsideDNA

    828 days ago

  • MAKER

    MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-ini...

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, MAKER, Genome, Annotation, Pipeline, NGS, Assembly

    656 days ago

  • BUSCO

    Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, BUSCO, Genome, Annotation, Pipeline, NGS, Assembly, Orthologs

    656 days ago

  • RATT

    RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can also transfer annotations between strains and even different species, like Plasmo...

    Tags: Bioinformatics, Computational Biology, Education, Cancer, Research, RATT, Genome, Annotation, Pipeline, NGS, Assembly

    656 days ago

  • n50PlottingTools

    Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools

    Tags: Bioinformatics, Computational Biology, Education, Plot, N50, NGS

    655 days ago

  • liftover

    Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/

    Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics

    655 days ago