Results for "Enrichment analysis"

Bio-Scripts

  • Blast result parser with Perl and Bioperl

    #!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...

    2899 days ago

  • Perl script to run SATSUMA in loop !

    #!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...

    2125 days ago

  • Install Parrot Virtual Machine !

    #Parrot is a virtual machine designed to efficiently compile and execute bytecode for dy...alled.................................no. auto::coverage - Are coverage analysis tools installed...Negative re...

    1521 days ago

  • Running Transrate !

    ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...mbly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv

    2107 days ago

  • Downloading GATK !

    jitendra@jitendra-UNLOCK-INSTALL[SNP] wget http...ne metrics for the given BaseCalling analysis directory. ExtractIllu...-------------------------- Coverage Analysis:...Tools that perform metagenomic analysis, e.g. microbial community com...

    2060 days ago

  • Installing pb-assembly on Linux !

    [jnarayan@hmem00 ~]$ module avail ----------------------...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...

    2019 days ago

  • Setting up falconUnzip conda environments for genome assembly !

    ...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...

    1974 days ago

  • Pack a perl program with their dependencies on Ubuntu !

    #Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/...materials ... Biostatistics is an innovative field that involves the design, analysis, and interpretation of data f...

    1496 days ago

  • Basic docker commands !

    jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...--autoConTAMPR v0.1-- Citation - autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks Licen...

    1493 days ago

  • Install and set up i-adhore for synteny and wgd analysis ! -- step by step --

    #Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow the...

    1188 days ago