Tools to detect synteny blocks regions among multiple genomes
...another or duplicated due to micro-rearrangements. SyntenyView ( http://www.cbs.dtu.dk/dtucourse/cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservat...2573 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...Biology PLOS Genetics Blogs. Some of these blogs are very relevant to bioinfo jobs. Others are more personal interest. The OpenHelix Blog Ensembl blog Galaxy News Blue Colla...2605 days ago
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are o...le analysis of chordate genome data. Ensembl computes pairwise and multipl.... Gene alignments are used to define Ensembl Protein Families, GeneTrees a...r and different alignment views. The Ensembl comparative genomics infrastr...2951 days ago
Awesome perl frameworks, libraries and software - PART 2
...e convention-based coding style. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl...2457 days ago
Awesome perl frameworks, libraries and software - PART 3
...e - REST::Google provides OO access to Google REST API from Perl Ensembl/Bio-DB-HTS - Git repo fo...sp;- Yet another tool to manage perl installs in your home directory. Ensembl/ensembl-funcgen - Ensemb...2457 days ago
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Next generation sequencing in R or bioconductor environment
...tting data and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic information from Ensembl TileQC: Flow Cell Quality Vi...3587 days ago
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Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3852 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.3354 days ago
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
...biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate t...386 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...rimary_Assembly/assembled_chromosomes/FASTA/http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/Reference annotation downloadhttp://useast.ensembl.org/info/data/ftp/index.html3583 days ago