Tools to detect synteny blocks regions among multiple genomes
...another or duplicated due to micro-rearrangements. SyntenyView ( http://www.cbs.dtu.dk/dtucourse/cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservat...2598 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...Biology PLOS Genetics Blogs. Some of these blogs are very relevant to bioinfo jobs. Others are more personal interest. The OpenHelix Blog Ensembl blog Galaxy News Blue Colla...2631 days ago
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are o...le analysis of chordate genome data. Ensembl computes pairwise and multipl.... Gene alignments are used to define Ensembl Protein Families, GeneTrees a...r and different alignment views. The Ensembl comparative genomics infrastr...2977 days ago
Awesome perl frameworks, libraries and software - PART 2
...e convention-based coding style. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl...2483 days ago
Awesome perl frameworks, libraries and software - PART 3
...e - REST::Google provides OO access to Google REST API from Perl Ensembl/Bio-DB-HTS - Git repo fo...sp;- Yet another tool to manage perl installs in your home directory. Ensembl/ensembl-funcgen - Ensemb...2483 days ago
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Next generation sequencing in R or bioconductor environment
...tting data and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic information from Ensembl TileQC: Flow Cell Quality Vi...3613 days ago
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Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.3878 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.3380 days ago
2132 days ago
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.Tags: BLAST, BLAT, EnsEMBL
3878 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.Tags: Bioinformatics, Computational Biology, Genomics, Comparative Genomics, Ensembl
3380 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate t...412 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...rimary_Assembly/assembled_chromosomes/FASTA/http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/Reference annotation downloadhttp://useast.ensembl.org/info/data/ftp/index.html3609 days ago