Results for "EnsEMBL"
Tags
Demo 4: Using BLAST/BLAT in Ensembl
We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.Tags: BLAST, BLAT, EnsEMBL
3880 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores and constrained ele...Tags: Bioinformatics, Computational Biology, Genome, RAD-Seq, NGS, Comparative Genomics, Resources, EnsEMBL
2979 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF (Ex: https://gist.githubusercontent.com/santhilalsubhash/1e7cca357e52a181dc25/raw/cfb803e07900a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation...
Tags: Bash, Scriptn GTF, Converts, EnsEMBL, NGS
2097 days ago
A script to convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs
Hello, I am looking for a program/function that converts different sources of IDs to Symbol IDs. The script in R will be an added advantage ... ThanksTags: Ensembl, Unigene, Uniprot, RefSeq, IDs, Symbol IDs Convert, R
3546 days ago
- New updates in e!77 !! Updated human gene set (GENCODE 21) Updated rat gene set including manual annotation from HAVANA New species: Vervet-African green monkey Imported Transcript Support Levels (TSLs) from UCSC for human and mouse Imported APPRIS f...
Tags: Bioinformatics, Computational Biology, Ensembl, Release77, e!77
3490 days ago
Comparative Genomics in Ensembl
The Ensembl browser provides viewable whole-genome alignments, homologues and phylogenetic gene trees, protein families, and ancestral sequences. Learn how to view and export these data in this video.Tags: Bioinformatics, Computational Biology, Genomics, Comparative Genomics, Ensembl
3382 days ago
- What is new? Expansion of Protists and Fungi with hundreds of annotated genomes Variation data for bread wheat, rice, Aedes aegypti, and Ixodes scapularis Whole genome alignments for O. longistaminata and T. cacao Non-coding RNA gene models in Bacteria New assembly of tomato (version 2.50)...
Tags: Bioinformatics, Computational Biology, Genomics, Comparative Genomics, Ensembl
3236 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence Ontology ...Tags: Ensembl, Variation, Calculated, variant, consequences, Variant, Effect, Predictor
2055 days ago
