Results for "Entrez Direct"
Blogs
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some fo...Part of the Open Bioinformatics Foundation. Contains the very useful Entrez...1126 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific g...narolab.org/gosstoweb/ GO Workbench The Gene Ontology Analysis Viewer allows direct browsing of the Gene Ontology...3693 days ago
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Bookmarks
- Recent studies of the human genome have indicated that regulatory elements (e.g. p...d measures to identify and prioritize critical regulatory targets and their direct and indirect interactions. AVAILABI...
2852 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for ac...tting normally complete the process. EDirect also provides a.... Queries can move seamlessly between EDirect commands and UNIX utilities o...cannot be accomplished entirely within Entrez.2738 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows...C itself. Also, C allowed programmers to (while sacrificing portability) have direct access to many machine-level...3931 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of...t nucleotide databases in an attempt to obtain all sequences that overlaps, directly or indirectly, with the “primer&rdq...2669 days ago
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Top-level pages
- ...as the Sequence Retrieval System (SRS) and the Entrez system). An unsolved problem...operties of the 3D structure cannot be deduced directly from the primary sequence....mics, no experimental technique can observe it directly on an atomic scale, and mot...
3930 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp...l ligand binding residues. As part of our testing, we perform one of the first direct comparisons of conservation-b...3727 days ago
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News
- In current era, we are handling huge amount of genomics data, and analysing it to mak...features, such as keeping all information from the raw BLAST output, allowing direct access to single results, and...
3873 days ago
Cancers cure is on the way !!!
The study on blind mole rat (Spalax) was car...mole rat to resist cancer, even when directly given potent cancer-causing...either through injections or applied directly to the skin, but the animal...but not normal cells, either through direct fibroblast-cancer cell intera...3739 days ago
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Opportunity posts
Associate Professor - Centre for Bioinformatics at Maharshi Dayanand University, Rohtak
ADVERTISEMENT No. PR-54/2013 No. of Posts and Specialization: 1(UR) Educational...ualification for all candidates to be appointed as Associate Professor through direct recruitment. (iii) A Maste...3780 days ago
Assistant Professor in Medical Bioinformatics
Advt. No : ME-I/A-IV/03/14 No.of Posts:01 (SC) Pay Scale: Pay Band of Rs.15600-391...Doctoral training in a frontier area of medical Bioinformatics Research and of direct relevance to clinical diagnos...3587 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # htt...("got %d sequences" % len(seqs)) from Bio import Entrez allseq = {} for x in seqs:...ccession'] print("downloading", nm) dna = Entrez...1119 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving..._2 Proceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9 | 5.2 MB | ########...1085 days ago
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Tags
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined t...Tags: Bioinformatics, Entrez Direct, EDirect, NCBI, Databases, Functions, EDirect, XML, Format, Queries, EDirect, UNIX, Entrez.
2738 days ago
