Results for "Error"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...a Perl module is not installed, application will display the following error message. In this example, XML...es using CPAN, make sure the cpan command is working. Following are the error message when CPAN module is n...3934 days ago
Five points for bioinformatics software/tools
...orked doc/postdoc!) so you are responsible for troubleshooting your own errors most of the time. We co..., in which you deal GB/TB of data are having maximum chances of getting errors, so please be careful and al...3691 days ago
- +18 more Blogs
Bookmarks
- ...Roche. But thier sequence format is different, also they have different error type. High quality data is ve...r reporting reads quality statistical details, trimming, filtering, and error correction. Please bookmarks...
3218 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...p is a novel mapper targeted at aligning long, error-prone third-generation sequen...sp;can handle a wide range of read lengths and error profiles, including: Ill...y important feature for technologies where the error rates and error profiles can...3209 days ago
- +59 more Bookmarks
Files
- ...hub.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following error: fail to open file './tempor...
2135 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ing gaps, correcting sequence errors and transferring annotation....Correction of Genome Sequence ErrorsAutoEditor is a tool for...g. It also provides tools for error correction, sequence-to-read...aps, corrects the base caller errors and performs additional trim...2670 days ago
Top-level pages
- ...defined, so the algorithm will try to group similar items together. Regression - Attempts to find a function which models the data with the least error. Association rule learning -...
3930 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 1...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Sal...t evidence of editing or are simply sequencing errors - the authors stand by their...3763 days ago
- +13 more Top-level pages
Wire posts
News
Update Genome Workbench 2.7.15 released
...ixed Go To Position dialog to give better diagnostics in case of a user error Graphical Sequence View: PDF...oolbar buttons Phylogenetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: op...3705 days ago
- ...is to repeatedly check its assembly before comparing to the reference genome, to account for simple sequence repeats that are a regular source of error in indel calling. When Scalpe...
3530 days ago
- +2 more News
ResearchLabs posts
- ...ing the information processing principles in life (systems biology) and making a computer out of bio-molecules. The key expertise of the lab is in error-correcting codes. We also wor...
3869 days ago
Fun
Golden Rules of Bioinformatics
All constant are variable. Copy and paste is a genetic error. First solve the problem, then write the code. No matter what goes wrong, it will probably look right. Any simple p...3900 days ago
The Best Bioinformatics / Computational Biology Quotes
...tually have several genomes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank god, my genome just compiled. Error message: "Out of space on gen...3704 days ago
- +1 more Fun
Bio-Scripts
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...count_of_A = 0; $count_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DN...eq 'G' ) { ++$count_of_G; } else { print "Error - Unknown base: $base\n";...2900 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...($esearch_result =~ m/(.*)/is) { die("ESearch returned an error: $1"); } me...} open( my $OUTFILE, ">" . $param{outputFile} ) or die("Error: Cannot open $param{outputFil...2900 days ago
- +30 more Bio-Scripts
Tags
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
2349 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and ...Tags: Bioinformatics, LoRDEC, Hybrid, Error, Correction, Program, Long, PacBio, Reads, Illumina
2566 days ago
- +15 more Tags
Comments
Comment on "A quick guide to Phred scaling"
.... It is used to quantify the probability of an error in each base call in a sequen...to a 10-fold decrease in the probability of an error. For example, a Phred score o...he Phred score, and p is the probability of an error in the base call. Qualit...399 days ago
- ...allows users to simulate reads with different error rates, read lengths, and inse...an simulate reads with different read lengths, error rates, and coverage levels. T...omize different sequencing parameters, such as error rates, read lengths, and inse...
399 days ago
- +10 more Comments
