Results for "Error"
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Comment on "A quick guide to Phred scaling"
.... It is used to quantify the probability of an error in each base call in a sequen...to a 10-fold decrease in the probability of an error. For example, a Phred score o...he Phred score, and p is the probability of an error in the base call. Qualit...405 days ago
- ...allows users to simulate reads with different error rates, read lengths, and inse...an simulate reads with different read lengths, error rates, and coverage levels. T...omize different sequencing parameters, such as error rates, read lengths, and inse...
405 days ago
Comment on "Short-read assembly using Spades !"
...or or a genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual...411 days ago
Comment on "Sibelia: A comparative genomics tool"
...-s loose Helicobacter_pylori.fasta Important note -- "Sibelia" requires some free space on HDD to run. If you experience any problems and see error messages that mention tempora...1275 days ago
- ...ptions: useGrid=string - Run under grid control (true), locally (false), or set up for grid control but don't submit any jobs (remote) rawErrorRate=fraction-error - The allowed difference in a...
2089 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...lty for end-clipping. [5] Read options: -e --err-rate [FLOAT] Maximum error rate of read. [0.04] -d --dif...ratio between read and reference. [0.04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads...2113 days ago
- AfterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provides functions fo...
2127 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap.... Works only for anchored modes. [false] --max-error FLT If an alignment has error....0, this filter is disabled. [1.0] --max-indel-error FLT If an alignment has indel...2282 days ago
- ...other C-based languages, making it much more reliable.Along with that, errors never pass silently unless t...s you to see and read why the program crashed and where to correct your error. 7. Batteries Included:...
2509 days ago
- ...or developing geneSCF, I tried to install it but got the following error bio@bio214b[geneSCF-master...geneSCF-master-source-v1.1-p2] ./prepare_database -db GO_all -org see []Error:Please specify one of these d...
2548 days ago
