Results for "Evaluation"
Blogs
...e - *OnePageR - *R SVM (R) KernLab (R) NeuralNetworks (R) NNet (R) Model Delivery Evaluating Models: *OnePageR - *R Evaluation (R) Scoring (R) PMML (R) Ex...3249 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that leverages a pangen...976 days ago
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Bookmarks
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in an...2935 days ago
- Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigor...
2916 days ago
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Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1904 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired...1.0.1 – Assembly Analysis FrameworkGAEMR (Genome Assembly Evaluation Metrics and Reportin) is a co...2670 days ago
Awesome perl frameworks, libraries and software - PART 4
...nting TaskPaper documents compactly for inserting into a "Junior" sized planner. ccurtsinger/stabilizer - Stabilizer: Rigorous Performance Evaluation zrlram/afterglow - grap...2479 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...oms, i.e. including their radii). PocketPicker: http://gecco.org.chemie.uni-frankfurt.de/pocketpicker/index.html Background: Identification and evaluation of surface binding-pockets an...3728 days ago
Commercial and public next-gen-seq (NGS) software
...ce alignment of paired-end and single-end Illumina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commercial. Available free for evaluation, educational use and for use...3503 days ago
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Wire posts
News
- ...as the apply functions and Reduce() now force arguments to the functions they apply in order to eliminate undesirable interactions between lazy evaluation and variable capture in closu...
3290 days ago
Opportunity posts
- ...r one position of Junior Research Fellow (JRF) in a Department of Biotechnology (DBT) sponsored research project entitled “Design, synthesis and evaluation of potent aminopeptidase inhi...
3933 days ago
- ...s at the advanced level (second cycle) corresponding to one year and of these one semester should be a degree thesis. In order to facilitate the evaluation of merits and suitability for...
3882 days ago
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ResearchLabs posts
- ...ties at the molecular level. Research Area the discovery and on-demand use of biomedical data and services the formulation, discovery and evaluation of scientific hypotheses the...
3932 days ago
- ...prediction in simplified protein models, investigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative splice forms,...
3924 days ago
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Bio-Scripts
- ...emblies and calls complex structural variants -------------------------------------------------------------------------------------- Variant Evaluation and Refinement:...
2060 days ago
Pack a perl program with their dependencies on Ubuntu !
...T Exam is both the question paper & answer key is released... Evaluation of genome assembly software based on long readsBy BioStar 409 days ago Evaluationgenomeassemblysoftwarelongread...1496 days ago
Tags
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference genome from one or more FASTA files. Alternativ...Tags: Seal, SEquence, ALignment, evaluation, suite
2299 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is correct Their relative order is correct The gap estimate...Tags: Repeat, aware, scaffolding, evaluation, framework, Igor, Mandric, repeat-aware
2221 days ago
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Comments
Comment on "Short-read assembly using Spades !"
..._reads.fastq" are the forward and reverse reads in FASTQ format. Evaluation of assembly: After running SP...sing SPAdes. However, the specific parameters used for SPAdes and the evaluation tools may vary depending on t...400 days ago
Comment on "EFS: an ensemble feature selection tool implemented as R-package and web-application"
A review of ensembles for feature selection is described. Current state-of-the-art is provided. Types of ensembles, combination methods and evaluation measures are described. Some ch...1544 days ago
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