Results for "Exome Seq"

Bookmarks

  • Next Generation Sequencing (NGS) Tutorials

    ...standing the basics of genome sequencing: Tutorial by Luke Josti...etic variations using the HugeSeq pipeline  DOI: 10.1038/n...e analysis pipeline for whole-exome data http://www.biomed...t analysis of next-generation sequencing data. http://www....

    3450 days ago

  • Public Databases for Bioinformatics !

    https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Serv...data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...

    1101 days ago

  • Encode sequencing data freely available to download and use for academic means

    In Encode, regulatory elements investigated via DNA hypersensitivity assays,...ith DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: https:/...

    3668 days ago

  • New RNA Seq tool

    "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/

    3625 days ago

  • Bioinformatics Protocols

    RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et a...g and iteration logic. WGS/exome GATK-based variant calling...red for WGS data; there is an exome branch configured for varia...g of the raw reads for the subsequent analysis and initial qual...

    3615 days ago

  • Orione – a web-based framework for NGS analysis in microbiology

    End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metageno...

    3536 days ago

  • BioScripts

    You are requested to please bookmark collection of b...lex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome se...lexa/illumina, SOLiD/ABi, 454/Roche. But thier sequence format is different, als...

    3196 days ago

  • Stacks

    Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks...eveloped to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building...

    2955 days ago

  • RNA-Seq De novo Assembly Using Trinity

    Trinity, developed at the Broad Inst...ion of transcriptomes from RNA-seq data. Trinity combines three...ysalis, and Butterfly, applied sequentially to process large vol...Inchworm assembles the RNA-seq data into the unique sequence...t https://github.com/trinityrnaseq/trinityrnaseq/wiki ............

    2927 days ago

  • HOMER: Software for motif discovery and next-gen sequencing analysis

    This tutorial covers topics independently of...ng environment Retrieving and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, gener...expression datasets (microarray or RNA-Seq) Microarray Basic analy...

    2893 days ago