Results for "Exome Seq"
Top-level pages
Bioinformatics Courses Around the World
Bioinformatics Courses around the wo...dividual research programs. Consequently, we have not included a...analysis of biomacromolecular sequences; 2. computational analy...ames Bonfield, three-day courseSequencing Project Management Usi...(bioinformatics: computational sequence analysis of biological m...3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next genera...nt storage of high throughput sequencing data using reference-b...PubMedCentral Correction of sequencing errors in a mixed set...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...ery and genetic mapping using sequenced RAD markers. Baird et a...3769 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be...Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy En...ourceforge.net/ Suite of packages for sequencing, searching, etc. Gagg...or NTI, a tool to analyze and edit DNA sequence files Integrated Genome...3747 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software...adinstitute.org/~sfs/cosi/CS-PSeq-Gen A program to simulate the...xperimental pipelines for RNA-Seq, employing a minimal set of p...raphael.leblois.free.fr/indel-Seq-Gen A biological sequence sim...l to generate data of related sequences along a given phylogeny...3727 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioco...es within Bioconductor's BioC-Seq domain. Its classes and metho...additional information about sequence ranges, such as chromoso...with a Biostring based genome sequence. BSgenome packages exist...ocumentation Additional ChIP-Seq Packages DiffBind: Documenta...3615 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomic...llection for fast index-based sequence comparison. It contains...ent Program) for mRNA and EST Sequences. Developed by Thomas Wu...llection for fast index-based sequence comparison. It contains:...en's lab at UCLA). POSIX. CHiPSeq - Program used by Johnson et...3509 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genom...ighted tool that aligns short sequences to a sequence database,...lignment of finished or draft sequence. Released as a package p...e * ABySS - Assembly By Short Sequences. ABySS is a de novo seq...ts and SNP detection of short sequence reads. From the Evolutio...3232 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genom...454 (Roche), and Pac Bio DNA-Seq Feature, can annotate with dbSN...“In addition to Sanger sequence data, reads from these hig...annotates variants from whole-exome sequencing data; Based on Jannova...2899 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of qual...ed-end reads to the assembled sequence. Structure variation and...Phrap/Consed 29.0 – DNA Sequence Assembler & Finishin...ression and regulation in RNA-Seq samples. It accepts aligned R...2676 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment fo...sion of transcripts using RNA-seq data (uses k-mers) http...ly with error-containing long sequence (e.g., ONT or PacBio rea...eads based on a comprehensive sequence database Software (C++)...2361 days ago
