Results for "Exome Seq"
Blogs
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS applicatio...helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3186 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in...ions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking st...udy on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3186 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...standing the basics of genome sequencing: Tutorial by Luke Josti...etic variations using the HugeSeq pipeline DOI: 10.1038/n...e analysis pipeline for whole-exome data http://www.biomed...t analysis of next-generation sequencing data. http://www....3477 days ago
Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Serv...data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...1128 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of qual...SO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...sh; DNA Assembly of the Short Sequences coming from 454 sequenc...rowse interface driven by the Seqfeature database. It accepts b...2675 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plu...Tools for working with second gen assemblies, fasta sequences, etc obfuscurity/nagio...A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity...2483 days ago
Top-level pages
Bioinformatics Courses Around the World
Bioinformatics Courses around the wo...dividual research programs. Consequently, we have not included a...analysis of biomacromolecular sequences; 2. computational analy...ames Bonfield, three-day courseSequencing Project Management Usi...(bioinformatics: computational sequence analysis of biological m...3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next genera...nt storage of high throughput sequencing data using reference-b...PubMedCentral Correction of sequencing errors in a mixed set...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...ery and genetic mapping using sequenced RAD markers. Baird et a...3769 days ago
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Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 20...r, 2013) workflows on RNA-Seq data pathway analysis and gen...des a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...sis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...Although we focus on RNA-Seq data here, but pathway analys...3822 days ago
- ...deletions in next generation sequencing data sets. Scalpel, whic...imulated and real whole human exomes. Like other indel callers,...genome, to account for simple sequence repeats that are a regul..., were selected for focused resequencing. This resequencing rev...
3536 days ago
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Opportunity posts
Postdoctoral position in bioinformatics @ Sweden
Information about the department The Depart...al researcher to work with large-scale sequence data analysis. The posit...or and analysis of next generation DNA sequencing, in particular compara...in particular from next generation DNA sequencing, is highly valued. The...3937 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...pe conference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...ologies. The conference will tackle the huge amounts of sequencing data produced by new t...3906 days ago
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ResearchLabs posts
- The Huber group develops computational and statistical methods to design and analyse...hine learning, sparse model building and causal inference. DNA-, RNA- and ChIP-Seq and their applications to gen...
3880 days ago
- Laboratory of Statistics and Computational tools for Bioinformatics The Laborat...applications. In particular, current activities involve the analysis of ChIP-seq and RNA-seq experiments. More at http...
2952 days ago
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Bio-Scripts
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2906 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
#!/usr/bin/perl -w my $usage="\nU...". "Print out the name of sequences with characters other t..."If multiple files are given, sequences in all files are marged...my $format = "fasta"; my @seqArr = (); @ARGV = ('-') unl...f (defined($opt_m)) { my $seqOut = Bio::SeqIO->new(-fs => \...2904 days ago
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Groups
Python is a programming language that lets you work more quickly and integrate your...n lovers. Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3935 days ago
Tags
- GenXPro GMbH is service provider for entire spectrum of nucleotide-based information of any biological sample. By combining intelligent data reduction techniques and latest next generation sequencing technologies, our service portfolio provides most accurate and cost efficient solu...
Tags: Sequencing, DNA-Seq, RNA-Seq, MACE, Epigenetics, microRNA, Chip-Seq, RAD-Seq, Methylation-Seq, transcriptomics, GBS, Gene expression, de-novo assembly, breeding, Exome Seq, Rare variants
3625 days ago
