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Results for "Extract"

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• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  Tags: Reads, NGS, Extract, Pattern

  2486 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  Tags: Bed, Extract, Sequence, bedtools

  2229 days ago

• • Rahul Nayak@rahul

  

  #Extract all the files from a #directory and #sub-dir with #pattern. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .

  Tags: Extract, directory, sub, pattern

  2215 days ago

• • Jit@jit.aber

  

  Extract sequence by ids $ xargs samtools faidx Adineta_vaga.v2.pep.fa < AlienIds > allAlienSeq.fa #Extract #Ids #Sequences

  Tags: Extract, Ids, Sequences

  1950 days ago

• • Jit@jit.aber

  

  Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa #Pattern #Extract #Fasta

  Tags: Pattern, Extract, Fasta

  1894 days ago

• • Manisha Mishra@manisha

  

  Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

  Tags: extract, fasta, sequence, ids

  2195 days ago

• • Rahul Agarwal@raag

  

  https://scrapy.org/ #extract #data #from #websites #webscraping

  Tags: extract, data, from, websites, webscraping

  2170 days ago

• • Rahul Nayak@rahul

  

  This script will #extract the intron feature #gff3 and sequence from gene_exon gff3 and fasta file. Extract-intron-from-gff3

  Tags: extract, gff3

  1906 days ago

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