Results for "Extract Region"

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  • Download mutliple fasta file from NCBI in one GO!!

    if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . A...

    3873 days ago

  • RNA-Seq De novo Assembly Using Trinity

    Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the...ty at at a given gene or locus, and then processes each graph independently to extrac...

    2928 days ago

  • DISCOVAR

    DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both...ntinuity that was not previously possible. DISCOVAR can call variants on a region by region basis, potentially tiling an...

    2902 days ago

  • COSMIC

    The accurate description and annotation of structural variants can be complex.  T...akpoints which make up a structural variant. A breakpoint is defined as a region or point where the sample seq...

    2735 days ago

  • HybPiper

    ...ibraries are enriched for gene regions of interest, especially for p...oinformatics tools in order to extract target sequences from high-th...of the sample for each target region, and a separate file with the...ter the main pipeline, to also extract the intronic regions flanking each exon, investig...

    2702 days ago

  • Cgaln

    Cgaln (Coarse grained alignment) is a program designed to...can explore genomic rearrangements and reduce the regions to be analyzed in the next s...s devoted to detailed alignment within the limited regions found in the first stage. Th...

    2592 days ago

  • PANDASEQ

    PANDASEQ assembles paired-end Illumina reads into se...imers were used (e.g., to isolate a variable region of the 16S gene, or the constant regions around zinc finger binding r...CASAVA and adjust the probabilities in this region.4.Construct an assembled sequ...

    2622 days ago

  • GroopM: Metagenomic binning toolset

    GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extrac...

    2579 days ago

  • LoRDEC: a hybrid error correction program for long, PacBio reads

    LoRDEC is a program to correct sequencing errors in long r...equence of PacBio reads is usable for detection of region of similarity with other sequ...and seeks a corrective sequence for each erroneous region of a long read by traversing...

    2545 days ago

  • Mapping NGS

    NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference...

    2523 days ago