Results for "FASTA"

Tags

  • GenBank to FASTA format conversion, Written By Junguk HUR http://tinyurl.com/ntp7w5v #Perl #FASTA #Genbank

    Tags: Perl, FASTA, Genbank

    1454 days ago

  • Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

    Tags: FASTA, FASTAQ, NGS

    1214 days ago

  • Filter #blank #lines from a #fasta file using sed. $ sed '/^$/d' finalSample.fa > finalSample_filtered.fa #Linux #Filter #FASTA #SED

    Tags: blank, lines, fasta, Linux, Filter, FASTA, SED

    118 days ago

  • zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

    Tags: fastaQ2fasta, fastaq, fasta, Oneliner

    1232 days ago

  • Remove the unnecessary #fasta #header. $ sed 's/\s.*$//' Adineta_vaga_v2.0.scaffolds.fa > new_file.fasta

    Tags: fasta, header

    81 days ago

  • Remove unwanted character from fasta file. sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #fasta #file #header #charater

    Tags: fasta, file, header, charater

    68 days ago

  • Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

    Tags: fasta, header, sed

    68 days ago

  • Remove illegal character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #illegal #correct #fasta #sed #remove #linux #oneliner

    Tags: illegal, correct, fasta, sed, remove, linux, oneliner

    25 days ago

  • perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta

    Tags: Perl, Extract, Fasta

    1207 days ago

  • Remove N from a fasta file. Go to vi editor, type :%s/N\{25,\}//g and press enter. #Vim #vi #N #Replace #Fasta

    Tags: Vim, vi, N, Replace, Fasta

    1207 days ago