Results for "FASTQ"

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  • SCALCE

    ...s using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid...

    2905 days ago

  • FQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool

    FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly...

    1235 days ago

  • ART: Set of Simulation Tools

    ...he 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the...

    2702 days ago

  • fqtools

    fqtools is a software suite for fast processing of FASTQ files. Various file manipulations a...specify the format of the data provided. For subcommands that generate FASTQ data, either a single file or...

    2667 days ago

  • Standardized velvet assembly report

    ...perl fastaAllSize mysequences.fa > mysequences.stat or gunzip -c mysequences.fa.gz | fastaAllSize > mysequences.stat Substitute fastqAllSize for fastq files. ./permute.sh mysequen...

    2667 days ago

  • ScaffMatch

    ...with no options. It is used when .sam files are used instead of reads .fastq files. Do not use this option...you provide reads files;   -1) (Comma separated list of) either .fastq or .sam file(s) corresponding...

    2662 days ago

  • PANDASEQ

    PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information....

    2622 days ago

  • SeqMule: Automated human exome/genome variants detection

    SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can...

    2578 days ago

  • WGS Celera Assembler version 8.3rc2

    ...7,2M Apr 10 11:41 falcon_sense-rwxrwxr-x 1 urbe urbe 9,8K Apr 10 11:41 fastaToCA-rwxrwxr-x 1 urbe urbe 124K Apr 10 11:40 fastqAnalyze-rwxrwxr-x 1 urbe urbe 137K Apr 10 11:40 fastqSample-rwxrwxr-x 1 urbe urbe&n...

    2545 days ago

  • Fastq format

    FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both...

    2522 days ago