Results for "Fast"

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  • Public Databases for Bioinformatics !

    ...prediction data, enhancer prediction, motif calls /srv/scratch/$USER fast local storage not backed up,...eleted most analysis should be performed here /srv/persistent/$USER fast local storage synced nightly...

    1101 days ago

  • Bioinformatics software for biologists in the genomics era

    The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled with fast-declining, per-base sequencing costs, this influx of DNA seq...

    3748 days ago

  • HiCdat

    HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCda...

    2967 days ago

  • PEAR: a fast and accurate Illumina Paired-End reAd mergeR

    PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR e...

    2913 days ago

  • mrFAST: Micro Read Fast Alignment Search Tool

    mrFAST is a read mapper that is designed to m...ariation and segmental duplications. mrFAST maps short reads with respect...ow to choose the parameters and tune mrFAST with respect to the library s...ter is invoked. More at http://mrfast.sourceforge.net/manual.html

    2893 days ago

  • CNIDARIA: fast, reference-free phylogenomic clustering

    Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data witho...

    2841 days ago

  • Kaiju

    ...ther protein database without taxonomic classification, using either protein or nucleotide queries. Kaiju is described in Menzel, P. et al. (2016) Fast and sensitive taxonomic class...

    2831 days ago

  • Redundans

    ...tial de novo assembly scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast & lightweight,...

    2765 days ago

  • Murasaki

    Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wal...

    2736 days ago

  • Beagle

    ...on of ungenotyped markers, and identity-by-descent segment detection. Beagle version 4.1 has a more accurate genotype phasing algorithm and a very fast and accurate genotype imputat...

    2709 days ago