Results for "Fastq"

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  • Download blasr 1.3 version

    ...n_core] convert to sequence coordinate... 1.00 sec[bwa_aln_core] refine gapped alignments... 6.07 sec[bwa_aln_core] print alignments... PREPROCESS:Fastq format is recognized[Thu Jun...

    2114 days ago

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  • Genome Assembly Tools and Software - PART2 !!

    ...alability in mind. It can assemble large and high-coverage genomes from fastq files in a short time and pro...e-assembled contig sequences (FASTA) and NGS paired-read data (FASTA or FASTQ). The final scaffolds are pro...

    2648 days ago

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  • zcat input_file.fastq.gz | awk 'NR%4==1{printf ">%s\n", substr($0,2)}NR%4==2{print}' > output_file.fa #fastaQ2fasta #fastaq #fasta #Oneliner

    3609 days ago

  • FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #NGS #FastaQ #Fasta

    3598 days ago

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  • SCALCE

    SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumina-generated FASTQ files, but supports any valid FASTQ with consistent read lengths.  ...

    Tags: Bioinformatics, FASTQ, Compression, Decompression, NGS

    2905 days ago

  • ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies

    Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and inse...

    Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly

    2894 days ago

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