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YASS :: genomic similarity search tool
...T]) using different scoring schemes with bit-score and E-value evaluated according to the sequence background frequencies parameterizable output filter for low complexity repeats r...2909 days ago
- ...your reads. Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapte...
2898 days ago
- ...ncing reads. Cutadapt helps with these trimming tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapte...
2683 days ago
- ...en into consideration while each alignable region is extended as long as possible. Thus, Cgaln is not only fast and memory-efficient, but also can filter noisy outputs without missing...
2613 days ago
- ...lecule taking overlaping contigs and gaps in to account. MUMmer's alignment generating programs, Nucmer and Promer are used followed by the 'delta-filter' utility function. Users coul...
2619 days ago
orthodotter: Synteny plots (oxford grid)
...r, default is black -bg : background color, default is transparent -fSize <int> : fontSize, default is 1 -filter : check chromosome name...2445 days ago
- ...ted in my fermi assembler and then refined a few times in fermi, fermi2 and now in BFC. In the k-mer counting phase, BFC uses a blocked bloom filter to filter out most singleton k-mers and...
2150 days ago
- ...d represents an anchor for determining if a sequence is unique enough to safely call variants from, which is an alternative to the mapping quality filter for read alignment. http:/...
2136 days ago
- ...whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with the help of a Bloom filter that represents the k-mer spe...
2117 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...mbly, calculates both the read and assembly K-mer coverage along with GC% for each sequence in the assembly.SEquence Coverage estimator Tool. filter: Filtering tools. Contains tools for...1966 days ago
