2667 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2103 days ago
2089 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2088 days ago
2038 days ago
1488 days ago
1404 days ago
1178 days ago
Tadpole is 250x faster than SPADes assembler !
...ounttodump=1 Only dump kmers with at least this depth. showstats=t Print assembly statistics after writing contigs. Prefiltering parameters: prefilter=0 If set to a positiv...938 days ago
913 days ago