Results for "Finding"

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  • Gene Finding and Predictions

    In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA seq...

    Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, Finding, Genome

    2772 days ago

  • Quickly #Finding #Orthologs as Reciprocal Best #Hits with #BLAT, #LAST, and #UBLAST: How Much Do We Miss? http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101850

    Tags: Finding, Orthologs, Hits, BLAT, LAST, UBLAST

    2509 days ago

  • HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes

    HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully automated (requires minimal human intervention), as well as very ea...

    Tags: HGT-Finder, Tool, Horizontal, Gene, Transfer, Finding, Application, Aspergillus, genomes

    2263 days ago

  • Porechop: tool for finding and removing adapters from Oxford Nanopore reads

    Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapte...

    Tags: Porechop, tool, finding, remove, adapters, Oxford, Nanopore, reads, ONT, NGS, Long

    2131 days ago

  • AccessSyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies

    AccessSyRI: finding genomic rearrangements andlocal sequence differences from whole-genome assemblies SyRI, a pairwise whole-genome comparison tool for chromosome-level assemblies. SyRI starts by finding rearranged regions and then searches for differences in the sequences, which are distinguish...

    Tags: AccessSyRI, finding, genomic, rearrangements, sequence, differences, whole-genome, assemblies

    1518 days ago

  • Finding a mimicry game for teaching on-line and mentioned general resources

    Mimicry and other resources Mimicry games: Great Heliconius game: http://heliconius.org/evolving_butterflies/ (See also https://royalsocietypublishing.org/doi/10.1098/rspb.2020.0014) Other one, a bit less friendly: https://ccl.northwestern.edu/netlogo/models/Mimicry Camouflage practical ...

    Tags: finding, mimicry, game, teaching, on-line, general, resources

    640 days ago