Results for "Format"
Users
About me: BioinformaticsOnline(BOL) founder. http://bioinformaticsonline.com/about Within the broad domain of bioinformatics and computational biology, I mainly focus on chro...mains. It is obvious in computational biology/ bioinformatics area to get distracted by...Brief description: BioinformaticsOnline(BOL) adminInterests: BioinformaticsSkills: BioinformaticsContact email: info@bioinformaticsonline.comWebsite: http://bioinformaticsonline.com/61 days ago
- Skills: Bioinformatics
3900 days ago
- +96 more Users
Blogs
- ...ething more valuable than preparation and transformation of data. In addition to EH...ever, this method may configure it in a 32 bit format. This may not be the best way...re mentioned in my previous blog @ http://bioinformaticsonline.com/blog/view/710/ho...
3922 days ago
Computational Proteomics : Lets remember the basics
...the-Periodic-Table The eagle genomics group provide an element of bioinformatics in periodic tables. Yes you got it, this is not periodic table rather bioinformatics tools with periodicals ht...3470 days ago
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Bookmarks
- Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enz...and also external ones such as BioPortal. Its main goal is to provide information about enzymes in a suitabl...
3879 days ago
- ...ATK: Unified Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads and generates a list of likely variants in VCF format Pipelines are for those who...
3636 days ago
- +90 more Bookmarks
Files
- ...: 2402.523 sec; CPU: 53429.488 sec[E::hts_open_format] Failed to open file temporar...aln_core] print alignments... PREPROCESS:Fastq format is recognized[Thu Jun 14 18:1...nalyzing sorted results...Extracting linking information...i3 2000 5000i2 1000 2000...
2134 days ago
Pages
Bio++ : C Language libraries for your biological need
...ms for plotting trees, with support for vector formats like SVG, Fig or LaTeX-PGF.S...ally, Bio++ is a set of C++ libraries for Bioinformatics, including sequence analys...neous or not. Population genetics A new file format to deal with codominant marke...3930 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformatician deal are just HUGE &hellip...2 simple commands that most bioinformatician want to know when they s...on '-h' stands for human readable format. Therefore, in order to print...the '-h' indicates human readable format. Hence instead of kilobytes a...3685 days ago
- +4 more Pages
Top-level pages
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sf...they occupy less space in memory with maximum information content. Link for those w...ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff...3902 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...The Sequence Alignment/Map format and SAMtools. Li et al, Bioin...d set of reads. Salmela, Bioinformatics 26(10):1284, 2010. Full Te...profiling. Łabaj et al, Bioinformatics 27:i383 - i391, 2011 Full...-seq reads. Chong et al, Bioinformatics 28(21):2732-7, 2012. Publ...3762 days ago
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Wire posts
News
- ...ng code and integrating functionality of base functions to simultaneously perform multiple actions.Function names in the pacman package follow the format of p_xxx where ‘xxx&rsq...
3348 days ago
- ...ely the Windows C runtime’s lack of C99 compliance means that the format cannot be read correctly there in R before 3.1.2. The default for formatC(decimal.mark =) has been cha...
3288 days ago
- +6 more News
Opportunity posts
- ...nce as well as their applications in bioinformatics and business informatics. The research programme wi...ed disciplines (such as mathematics, bioinformatics or business informatics)....ns can be sent to: TU Dresden, Fakultät Informatik, Institut für Systemarchite...
3930 days ago
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
...ct Fellow First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics...ct Fellow First Class M.Sc./M.Tech in bioinformatics/Human Genetics/Genomics...below: 1. Sending the resume in MS Word format directly to hrd@igib.res.in (...3885 days ago
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Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the...e at the Tomato Disease Workshop 2010. For more information, please visit http://www.extension.org/pages/32521/bioinformatics-101-video.3879 days ago
Bio-Scripts
Download genome using NCBI esearch command line !
..."CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI f...1084 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1084 days ago
- +50 more Bio-Scripts
Groups
Bioinformatics Skill Development Program (BSDP)
...wo week short courses in bioinformatics, genomics, proteomics and...or a skilled and trained bioinformatics and computational biology...ormatics skills. For BSDP new format and series of exciting worksh...r more updates: training@bioinformaticsonline.com3690 days ago
Tags
- Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
Tags: Bioinformatics, Analysis, NGS, Tools, Gene, Genome, Format
2789 days ago
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Comments
Comment on "A quick guide to Phred scaling"
...e base call. Quality score encoding: The Phred quality scores are typically encoded in the quality score field of the FASTQ file format, which is a common format used for storing sequencing r...398 days ago
Comment on "Short-read assembly using Spades !"
...the directory where the assembled genome will be saved, "forward_reads.fastq" and "reverse_reads.fastq" are the forward and reverse reads in FASTQ format. Evaluation of assembly:...398 days ago
- +19 more Comments
