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ACANA: An accurate and consistent alignment tool for DNA sequences
...ol for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletio...2332 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
...ph. Each long read is then corrected independently by identifying low frequency k-mers in the long read and replacing them with the closest matching high frequency k-mers in the implicit de Bru...2085 days ago
2044 days ago
KAST: Perform Alignment-free k-tuple frequency comparisons from sequences
Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.2044 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
...observed. Specifically, nQuire uses next-generation sequencing data to distinguish between diploids, triploids and tetraploids, on the basis of frequency distributions at variant site...1911 days ago