Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...dels, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher...3787 days ago
Apps for Busy Bioinformatics Researchers !!!
...oss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated genes, functional impact, allele frequency in data sets, and cross-refer...3504 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...otates genomic data with allele and genotype frequency, functional impact prediction...tched samples; uncovers SNPs with low allele frequency by considering alpha contamin...notation, selected ENCODE annotation, allele frequency in the 1000 Genomes Project,...2871 days ago
Some useful Bioinformatics links
...nalysis (TNA) | BIOiPLUG Help center http://help.bioiplug.com/tetra-nucleotide-analysis-tna/ Clustering metagenomic contigs on tetranucleotide frequency — CGAT documentation h...2204 days ago
List of non-commercial NGS genotype-calling software
...8.212/thorfinn/realSFS/ Single-sample Aligned reads Software for SNP and genotype calling using single individuals and allele frequencies. Site frequency spectrum (SFS) estimation Sa...2059 days ago