Results for "Frequency"

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  • Tetra-Nucleotide Analysis

    A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the informat...

    Tags: Bioinformatics, Tetra-Nucleotide, Analysis, Frequency, DNA, Phylogeny, Algorithms

    2521 days ago

  • #Calculate The #Frequency Of Letters In A Biological Sequence, Or The #Consensus Matrix Of A Set Of Sequences https://www.rdocumentation.org/packages/Biostrings/versions/2.40.2/topics/letterFrequency

    Tags: Calculate, Frequency, Consensus

    1486 days ago

  • d2Tools: The toolbox for counting the frequency of k-tuple from sequencing datasets and calculate the dissimilarity

    d2Tools are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with the d2-style(d2/d2*/d2S representing d2/d2Star/d2shepp, respectively) measures. Hao, Dai, Eucliean, Mahattan, and Chebyshev ...

    Tags: d2Tools, toolbox, count, frequency, k-tuple, sequencing, calculate, dissimilarity

    2017 days ago

  • KAST: Perform Alignment-free k-tuple frequency comparisons from sequences

    Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.

    Tags: KAST, Perform, Alignment-free, k-tuple, frequency, comparisons, sequences

    2017 days ago