Results for "Functional annotation"
Blogs
Five points for bioinformatics software/tools
...the program, but not the additional staff! Additionally, most of the functionality that you need in your anal...e doing. This is particularly true in the case of genome assembly and annotation. At the end, I would like to...3697 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon&rd...ence sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia (http://arxiv.org/...2600 days ago
List of gene ontology software and tools
...notation scheme to define the functional properties of all genes/probe...is). Also EasyGO is also a GO annotation database, especially focus on...ion.ac.il/ Gene Ontology for Functional Analysis (GOFFA) GOFFA is a...iomedical researchers, in the annotation of gene products with terms f...3700 days ago
Structural variation: the hidden genomic treasure
...re phenotypes (ie. genetic diseases in humans). Recent studies on the functional aspects of different types of...optimal alignment of sequences with SVs.2011 BreakSeqa pipeline for annotation, classification and analysis...2693 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
A laboratory (normally lab) is a facility that provides controlled conditions in which sci...c.in/Research Areas: Nutritional, structural, and functional genomics of various plant sys...ssion, computational biology, computational & functional...2354 days ago
List of motif discovery tools !
...text. AFAWE -- Automatic functional annotation in a distributed Web Services...mation about protein sequence annotations. PAR-3D -- Protein Acti...f the 3D structure of protein functional sites Search for structural...eases. TMFunction -- The Functional Database of Membrane Proteins...1983 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant...;s @rocioadh)● tama (Transcriptome Annotation by Modular Algorithms) &ndash...c reads to a genome, guided by a database of exon annotations. (Kristoffer Sahlin @kr...982 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assemb...dinstitute.org/igv/ Automated and semi automated annotation tools:Prokka - https://github...- http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/RapidAnnotationServerJCVI Annotation Service...1194 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the...d with 32 chromosomes (2n = 4x8 = 32) Download the tutorial for CDS and GFF annotation files mkdir -p wgd_tutoria...1145 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J,...omputing, Vienna, Austria. URL http://www.R-project.org/. RATT: RATT: Rapid Annotation Transfer Tool. Otto, T. D., D...1037 days ago
