Results for "Functional annotation"
Blogs
Five points for bioinformatics software/tools
...the program, but not the additional staff! Additionally, most of the functionality that you need in your anal...e doing. This is particularly true in the case of genome assembly and annotation. At the end, I would like to...3696 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon&rd...ence sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia (http://arxiv.org/...2598 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tuto...-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud computing-b...3476 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how...3804 days ago
- +131 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...of steroids which is objectionable to many consumers. Detected functional variant(s) underlying boar ta...ring SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected S...3778 days ago
India's own first drug - from Biocon.
Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Ind...years ago. Biocon tell to the media that genotypic played a critical role in functional...3908 days ago
Pages
- ...ished to create a new language that balanced functional programming with imperative p...ts multiple programming paradigms, including functional, object oriented, imperative...pider.com/Languages/Ruby/QuickRef.html Ruby Annotationhttp://www.w3.org/TR/ruby/ Ru...
3936 days ago
Introduction to Bioinformatics
Bioinformatics (Genomics) Biocomputing in a Nutshell. Biologist's Guide to Internet Resources Computational Mole...al Biology Course, Martin Tompa Course Distance Learning in Bioinformatics Functional...3909 days ago
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Top-level pages
- ...Databases provide additional functionality such as access to sequence...ed protein sequences and more annotations describing the function of a...d databases (mostly errors in annotation), in particular since errors...be thus understood as part of functional genomics. Similar structure c...
3935 days ago
- An algorithm is a computable set of steps to achieve a desired result. We use algorithms every day. For example, a r...tself repeatedly until a certain condition matches. It is a method common to functional...
3934 days ago
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Wire posts
News
- DST-SERB Winter School on Computational Chemistry (WSCC – 2013)December 9-13, 2013Or...uresh, CSIR- NIIST, Thiruvananthapurum]6. Density Functional Theory: The Hohenberg-Kohn th...Self-interaction correction; Dispersion corrected functional...
3818 days ago
Conserved Domain Database (CDD) version 3.11 released
National Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD) ve...d to mask out compositionally biased regions in query sequences; Domain annotation displays in CD-Search, BATCH...3716 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Sci...osystems it will be critical to establish a link between sequence variation, functional...3937 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowled...which of the many variants in these genomes have functional effects. Then we will try to...interactions between alleles, for example through functional...
3937 days ago
- +43 more Opportunity posts
ResearchLabs posts
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of high-throughput genomic technologies such as microarrays...
3936 days ago
- This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC)...Custom searches of the viral databases Building new tools . The genome annotation Link @ http://athena.bioc...
3936 days ago
- +22 more ResearchLabs posts
Video
- Dr. Rob Edwards describes some of the problems, challenges, and approches in genome annotation, with a particular emphasis on how the Fellowship for the Interpretation of Genomes (FIG) developed subsystems using the SEED database available at http://www.theseed.org/
3894 days ago
Bio-Scripts
- ...CF files into a single GVCF with appropriate annotations GenomicsDBImport...evaluate and refine variant calls, e.g. with annotations not offered by the engine...(BETA Tool) Functional Annotator GenotypeConcor...
2063 days ago
get GC across the entire CDS !
#look at GC across the entire CDS. gffread -x - -g | \ seqtk comp - | \ awk -v OFS="\t" '{ print $1, "0", $2, ($4 + $5) / $2 }'1381 days ago
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Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational Systems an...putational genetics Candidate gene prioritization by genomic data fusion Functional...3931 days ago
Tags
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entre...Tags: Functional annotation, real-time enrichment analysis, KEGG, GO, GeneOntology, REACTOME, cancer db
2860 days ago
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
GeneSCF is more reliable compared to other enrichment tools because of its ability to use reference functional databases in real-time to perform enrichment analysis. It is an easy-to-integrate tool with other pipelines available for downstream analysis of high-throughput data. More importantly, G...Tags: Enrichment analysis, KEGG, Gene Ontology, REACTOME, pathways, cancer enrichment, Functional annotation, Gene enrichment
2773 days ago
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...lected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate the genes in each g...ing them to other sources of genomic data, such as gene expression or functional analysis. Overall, genome sy...411 days ago
Comment on "Basic command-line to run BLAST"
...rall, BLAST is a powerful tool for searching sequence databases and can be used for many different types of analyses, including gene annotation, functional annotation, and comparative genomics....411 days ago
- +5 more Comments
