Results for "GC"
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Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope2972 days ago
PhyloGrapher - Graph Visualization Tool
...ents. In general, it is possible to use PhyloGrapher to visualize any type of relations between elements. More at http://www.atgc.org/PhyloGrapher/PhyloGrapher...2938 days ago
- ...g Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC content per sequence quality...
2930 days ago
- ...osciences sequencing. At the single-base level with Illumina data, ALE recovers 215 of 222 (97%) single nucleotide variants in a training set from a GC-rich Rhodobacter sphaeroides...
2919 days ago
- ...ing blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the conte...ate blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) t...parasites using taxon-annotated GC-coverage plots. Sujai Ku...embly, and to create and collate GC content, read coverage and ta...
2871 days ago
- ...alization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxono...
2870 days ago
- ...ease (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com> with...
2867 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...rodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perf...2672 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit processor and bui...
2653 days ago
- ...e MAF files in an efficient manner either from TCGA sources or any in-house studies as long as the data is in MAF format. Maftools can also handle ICGC Simple Somatic Mutation forma...
2623 days ago
