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Results for "GFA"

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• • Rahul Nayak@rahul

  

  RGFA: powerful and convenient handling of assembly graphs

  RGFA, an implementation of the proposed GFA specification in Ruby. It allows the user to conveniently parse, edit and write GFA files. Complex operations such as the separation of the implicit instances of repeats and the merging of linear paths can be performed. A typical application of RGFA is ...

  Tags: RGFA, powerful, convenient, handling, assembly, graphs, GFA

  1552 days ago

• • Jit@jit.aber

  

  #GFA to #FASTA file conversion. awk '/^S/{print ">"$2"\n"$3}' in.gfa | fold > out.fa

  Tags: GFA, FASTA

  2266 days ago

• • Jit@jit.aber

  

  #GFA to #Fasta file conversion. $ grep '^S' example.gfa |awk '{print ">"$2; print $3}' > example.fa

  Tags: GFA, Fasta

  2259 days ago

• • Jit@jit.aber

  

  GfaViz: flexible and interactive visualization of GFA sequence graphs

  GFA (Graphical Fragment Assembly) is an emerging standard format for representing sequence graphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more general, and able to represent many different types of sequ...

  Tags: GfaViz, flexible, interactive, visualization, GFA, sequence, graphs

  1549 days ago

• • Abhinav@abhinav

  

  gfastats: The swiss army knife for genome assembly.

  gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion. It has been tested in genomes even >...

  Tags: gfastats, summary, statistics, simultaneous, fasta, fastq, gfa

  590 days ago