Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene ord...2600 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is des...biological terms and and all genes that are instances of these terms. These Gene Ontology has become an extremely u...3699 days ago
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Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the genome are going to turn out...ne we are fighting against this society-wide misconception that having the bad gene mea...3891 days ago
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Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it...formatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...decomposition, inversion, etc.Random number generati...3937 days ago
BioRuby :Ruby packages for biologist
...o twice or more lines of other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FAN...3937 days ago
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Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073930 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of...ots for analyses such as differential expression or clustering, where for each gene lis...3929 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...ster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...k between sequence variation, functional variation, gene/pro...3938 days ago
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The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3937 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan...3908 days ago
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How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types u...erently. Transcription Factors help influence which genes are used in which cell. Unde...model their binding to DNA and their regulation of gene exp...3884 days ago
DNA is packaged in a chromosome experiment
For more information, log on to- http://shomusbiology.weebly.com/ Download the study materials here-...eates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetica...3866 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org...len(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-reg...1126 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot...GANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene len...2906 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generati...2352 days ago
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List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is designed to rigorously encapsulate the known relationships between biological terms and and all genes that are instances of these ...Tags: GO, Gene, Ontology, Gene Ontology, Enrichments, Pathway, Annotation
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Comment on "List of gene ontology software and tools"
...published TopoICSim: a new semantic similarity measure based on gene ontology provide a new view on&nbs...robust performance for quantification of semantic similarity between genes and proteins based on GO annotat...2822 days ago