3709 days ago
1501 days ago
Five unique traits of effective computational biologist
...bad biological programmer learn Perl's regular expression when they started a pro...ow do they explain their one graph (which they generally produce after one year o...have entered problems into search engines that generate no results, and every question...3933 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order...2593 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3933 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3928 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3935 days ago
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3927 days ago
Bio++ : C Language libraries for your biological need
...erse, concise manner in which powerful expressions can be coded. C was wi...tics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...position, inversion, etc.Random number generation: Quick & Dirty (32bits on...3930 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, dat...mely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontol...3930 days ago
3930 days ago
3929 days ago
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073923 days ago
R package for visualising GO enrichment
...ether with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour in th...3923 days ago
Structural polymorphism analysis from NGS data
...y Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3931 days ago
3931 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3931 days ago
3930 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan K...3901 days ago
3684 days ago
How Genes are Regulated: Transcription Factors
...types use it differently. Transcription Factors help influence which genes are used in which cell. Unde...ter understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3877 days ago
DNA is packaged in a chromosome experiment
...lly form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information in the...3859 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...en(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-regio...1119 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2900 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a pr...software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3513 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generation...2345 days ago
3926 days ago
3885 days ago
What Junk DNA? It’s an Operating System
The report adds to growing experimental support for the idea that all that extra stuff in the human genes, once referred to as “junk DNA,” is more than functionless, space-filling material that happens to make up nearly 98% of the genome. The paper adds to a growing body of knowledge ...Tags: Junk DNA, RNA, bioinformatics, sequencing, intron, granulocytes, splicing, gene expression
3894 days ago
What is the most recent activities of gene expression/pathway analysis ?
Hi, I am new in Bioinformatics and I've a Computer Science background. Even though I read one/two papers in gene expression/pathway analysis, I would like to know your opinions about most recent activities/difficulties in gene expression/pathway analysis or in any other relevant branch. I apprec...Tags: recent, gene expression, pathway analysis, difficulties
3883 days ago
Comment on "Tools for Differential expression analysis"
...and testing for differential expression. edgeR: Another R packag...is of RNA-Seq data. It uses a generalized linear model to model the co...s a linear model to model the gene expression data and provides methods for...ls available for differential expression analysis. The choice of tool...403 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conduc...of genomic data, such as gene expression or functional analysis....standing of genome structure, gene content, and evolutionary relations...406 days ago