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Five points for bioinformatics software/tools
...s does not absolve you of the need to actually read and research the type of analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At...3696 days ago
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List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3934 days ago
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Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a l...3941 days ago
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BioRuby :Ruby packages for biologist
...ioRuby project provides an integrated environment in bioinformatics for the Ruby language. This project is supported by University of Tokyo (Human Genome Center), Kyoto University(Bio...3936 days ago
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UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science meeting aims to bring together experts from around the...3908 days ago
Livestock Functional Genomics Summer School (LFG 2013)
...e participant should understand the basis and the context of livestock big molecular data, and be able to manipulate high density genotypes, whole genome sequences and transcriptome d...3918 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...lthcare conference. In the ten years since the first human reference genome was completed for US$3 billio...ly changed leading to great reduction in sequencing cost. Today a human genome can be sequenced for under US...3912 days ago
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Bioinformatician become producer/director !!!
...will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI...Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Mein Rehte Hein Do Seq...3908 days ago
What a bioinformatician always dream for ???
...ell established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy wi...3834 days ago
Bioinformatics -- Understanding of living systems through information science
...e life. One is example is the genome. In all organisms, DNA contai...ation, and this is called the genome. But the amount of informatio...erved between species. If the genome is considered as a long text,...as decoded the natto bacillus genome, through analysis using Keio'...3906 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...hington DC Local Description: There is an urgent need to translate genome-era discoveries into clinical...sease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesd...3900 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1125 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -quer...1090 days ago
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing...3405 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...nformatics. Briefly, the overall aim of the project which I am working for (AKMARK (Project CODE:5153403)) is, applying a bioinformatics-supported genome, transcriptome, proteome, and...2351 days ago
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Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb ethernet to SCG3 Access atx: dhara:5000 Has btsync server (try it - its much better than dropbox) Compute Servers: nand...Tags: public, database, test, genome, human
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MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions
2465 days ago
Comment on "Short-read assembly using Spades !"
...is the process of constructing a genome sequence from a large number...ing reads. SPAdes (St. Petersburg genome assembler) is a popular softw...the directory where the assembled genome will be saved, "forward_reads...ess and accuracy of the assembled genome by comparing it to reference...404 days ago
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