Results for "Genome"

Top-level pages

  • Genome Browsers

    Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome.ucsc.edu...

    1463 days ago

  • Using Interval Trees to Query Genome Annotations by Position

    ...y related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...

    1097 days ago

  • BioProgramming

    The completion of the first human genome drafts was just a start of the modern DNA...ion sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...cally suitable language to handle ever growing genome or protein sequences. The ne...

    1496 days ago

  • Quick next generation sequencing (NGS) terms definition

    ...a read pair is called concordant if they can be mapped to the reference genome as “expected”: (a...ature.split reads: a read that can only be mapped to the reference genome by breaking into two sub-read...

    71 days ago

  • NGS Glossary !!

    ...sequence reads to a reference genome. BAM Format: binary, compres...equence read to the reference genome. Three core abbreviations are...c variants. RNAME: reference genome identifier (also known as the...e sequence Referencesequence/genome  A fully assembled vers...

    417 days ago

  • Genomics for Bioinformatician

    ...n loci and alleles within the genome. In contrast, the investigati...n, and response to the entire genome's networks.Genomics was estab...d on the mapping of the human genome in 1986.The outcome of almost...ntion (CDC) in Atlanta of the genome of the virus that causes Seve...

    1490 days ago

  • Apps for Busy Bioinformatics Researchers !!!

    ...as NCBI, COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...s.apple.com/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...nd UniProt. SimGene alsocontains an integrated genome browser with information on g...

    1090 days ago

  • List of bioinformatics open source projects/software.

    ...Application that allows users to combine digital map data with information about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...

    1305 days ago

  • Useful Links for Bioinformaticians

    ...cla.edu/ls3/tutorials/ biology-online.org/ Cartoon Guide to Genetics genomebiology.com/tutorials/ http:/....edu/NDB/structure-finder/ tutorials/full_ndb.dna.rna.res.html About Genome genomebiology.com/tutorial...

    679 days ago

  • Next generation sequencing in R or bioconductor environment

    ...Rsamtools, rtracklayer, GenomicFeatures and BSgenome.  Compared to the IRange...al tools for SNP analysis:  snpMatrix BSgenome BSgenome provides an object...leverages the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...

    1173 days ago