Results for "Genome"

Top-level pages

  • Genome Browsers

    Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...:

    1522 days ago

  • Using Interval Trees to Query Genome Annotations by Position

    ...y related to overlapping genomic features: use IntervalTree python pkg htt...

    1157 days ago

  • BioProgramming

    The completion of the first human genome drafts was just a start of the modern DNA...ion sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...cally suitable language to handle ever growing genome or protein sequences. The ne...

    1555 days ago

  • Quick next generation sequencing (NGS) terms definition

    ...a read pair is called concordant if they can be mapped to the reference genome as “expected”: (a...ature.split reads: a read that can only be mapped to the reference genome by breaking into two sub-read...

    130 days ago

  • NGS Glossary !!

    ...sequence reads to a reference genome. BAM Format: binary, compres...equence read to the reference genome. Three core abbreviations are...c variants. RNAME: reference genome identifier (also known as the...e sequence Referencesequence/genome  A fully assembled vers...

    477 days ago

  • Genomics for Bioinformatician

    ...n loci and alleles within the genome. In contrast, the investigati...n, and response to the entire genome's networks.Genomics was estab...d on the mapping of the human genome in 1986.The outcome of almost...ntion (CDC) in Atlanta of the genome of the virus that causes Seve...

    1550 days ago

  • Apps for Busy Bioinformatics Researchers !!! NCBI, COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Genome Voyager: iPad Gain first han...nd UniProt. SimGene alsocontains an integrated genome browser with information on g...

    1149 days ago

  • List of bioinformatics open source projects/software.

    ...Application that allows users to combine digital map data with information about biological sequences collected from the environment. GenomeSpace Centralized web ap...

    1364 days ago

  • Useful Links for Bioinformaticians Cartoon Guide to Genetics http:/ tutorials/full_ndb.dna.rna.res.html About Genome

    738 days ago

  • Next generation sequencing in R or bioconductor environment

    ...Rsamtools, rtracklayer, GenomicFeatures and BSgenome.  Compared to the tools for SNP analysis:  snpMatrix BSgenome BSgenome provides an object...leverages the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...

    1232 days ago