Results for "Genome"

Top-level pages

  • Genome Browsers

    Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome.ucsc.edu...

    1353 days ago

  • Using Interval Trees to Query Genome Annotations by Position

    ...y related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...

    988 days ago

  • BioProgramming

    The completion of the first human genome drafts was just a start of the modern DNA...ion sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to...cally suitable language to handle ever growing genome or protein sequences. The ne...

    1386 days ago

  • NGS Glossary !!

    ...sequence reads to a reference genome. BAM Format: binary, compres...equence read to the reference genome. Three core abbreviations are...c variants. RNAME: reference genome identifier (also known as the...e sequence Referencesequence/genome  A fully assembled vers...

    308 days ago

  • Genomics for Bioinformatician

    ...n loci and alleles within the genome. In contrast, the investigati...n, and response to the entire genome's networks.Genomics was estab...d on the mapping of the human genome in 1986.The outcome of almost...ntion (CDC) in Atlanta of the genome of the virus that causes Seve...

    1381 days ago

  • Apps for Busy Bioinformatics Researchers !!!

    ...as NCBI, COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...s.apple.com/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...nd UniProt. SimGene alsocontains an integrated genome browser with information on g...

    980 days ago

  • List of bioinformatics open source projects/software.

    ...Application that allows users to combine digital map data with information about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...

    1195 days ago

  • Useful Links for Bioinformaticians

    ...cla.edu/ls3/tutorials/ biology-online.org/ Cartoon Guide to Genetics genomebiology.com/tutorials/ http:/....edu/NDB/structure-finder/ tutorials/full_ndb.dna.rna.res.html About Genome genomebiology.com/tutorial...

    569 days ago

  • Useful Publications and Websites for Deep Sequencing Data Analysis

    ...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubM...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...ty of California - Santa Cruz Genome Browser is on the FAQ list...

    1218 days ago

  • Software packages for next gen sequence analysis

    ...uences produced on a Illumina Genome Analyzer. A suite created by...f Nucleotide Databases. Whole genome alignments to a reference gen...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux....

    681 days ago