Results for "Genome"

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  • Steps for #Prokaryotic #genome #assembly and #annotation http://www.edamamecourse.org/docs/metagenome_assembly_and_annotation.html

    Tags: Prokaryotic, genome, assembly, annotation

    203 days ago

  • MGRA: Breakpoint graphs and ancestral genome reconstructions

    MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...

    Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions

    62 days ago

  • GOLD:Genomes Online Database

    GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/

    Tags: GOLD, Genomes, Online, Database, comprehensive, access, information, genome, metagenome, sequencing, projects, metadata

    61 days ago

  • PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

    Genome sequencing projects sometimes uncover more organisms than expected, especially for complex and/or non-model organisms. It is therefore useful to develop software to identify mix of organisms from genome sequence assemblies. PhylOligo, a new package including tools to explore, identify and...

    Tags: PhylOligo, package, identify, contaminant, untargeted, organism, sequences, genome, assemblies

    46 days ago

  • Gepard: a rapid and sensitive tool for creating dotplots on genome scale

    Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Θ(m*log n). A client–server mode, which is a novel feature for dotplot creation software, allows the user...

    Tags: Gepard, rapid, sensitive, tool, creating, dotplots, genome, scale

    40 days ago

  • Beginner’s #guide to #comparative #bacterial #genome analysis using next generation sequence data https://www.biomedcentral.com/content/supplementary/2042-5783-3-2-S1.pdf

    Tags: guide, comparative, bacterial, genome

    39 days ago

  • KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

    We present the K-mer Analysis Toolkit (KAT): a multi-purpose software toolkit for reference-free quality control (QC) of WGS reads and de novo genome assemblies, primarily via their k-mer frequencies and GC composition. KAT enables users to assess levels of errors, bias and contaminatio...

    Tags: KAT, K-mer, analysis, toolkit, quality, control, NGS, datasets, genome, assemblies

    33 days ago

  • Regular Expression Cheat Sheet

    The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick ...

    Tags: Cheat Sheets, Perl, Regular Expressions, Genome, Strings

    1538 days ago

  • Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?

    Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?

    Tags: Sequencing, RNA, DNA, Genome

    1530 days ago

  • 33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014

    RGCB is organizing the 33rd Annual Convention of Indian Association for Cancer Research from 13th to 15th February 2014 with the theme "Discovery, Innovation and Translation in Cancer Research" Kindly log on to conference website http://rgcb.res.in/IACR2014 for further details and timely updat...

    Tags: Conference, Genes, Genome, Molecular biology, Bioinformatics, Cancer

    1490 days ago